IL_4V4V_145

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GGAAGG*UCGGCC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4V_145 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.3778

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

4V4V|1|B0|G|1037
4V4V|1|B0|G|1038
4V4V|1|B0|A|1039
4V4V|1|B0|A|1040
4V4V|1|B0|G|1041
4V4V|1|B0|G|1042
*
4V4V|1|B0|U|1113
4V4V|1|B0|C|1114
4V4V|1|B0|G|1115
4V4V|1|B0|G|1116
4V4V|1|B0|C|1117
4V4V|1|B0|C|1118

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BK

50S ribosomal protein L16

Chain BT

50S ribosomal protein L25