IL_4V4W_005
3D structure
- PDB id
- 4V4W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 15 Å
Loop
- Sequence
- GAAA*UGC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4W_005 not in the Motif Atlas
- Homologous match to IL_5J7L_009
- Geometric discrepancy: 0.2534
- The information below is about IL_5J7L_009
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_57744.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
4V4W|1|AA|G|128
4V4W|1|AA|A|129
4V4W|1|AA|A|130
4V4W|1|AA|A|131
*
4V4W|1|AA|U|231
4V4W|1|AA|G|232
4V4W|1|AA|C|233
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AP
- 30S ribosomal subunit protein S16
- Chain AQ
- 30S ribosomal subunit protein S17
- Chain AT
- 30S ribosomal subunit protein S20
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