IL_4V4W_008

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

4V4W|1|AA|U|173

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4W_008 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.2816

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

4V4W|1|AA|G|147
4V4W|1|AA|G|148
4V4W|1|AA|A|149
4V4W|1|AA|U|150
4V4W|1|AA|A|151
4V4W|1|AA|A|152
4V4W|1|AA|C|153
*
4V4W|1|AA|G|168
4V4W|1|AA|C|169
4V4W|1|AA|U|170
4V4W|1|AA|A|171
4V4W|1|AA|A|172
4V4W|1|AA|U|173
4V4W|1|AA|A|174
4V4W|1|AA|C|175

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AT

30S ribosomal subunit protein S20