IL_4V4W_012

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

ACAAU*AU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4W_012 not in the Motif Atlas

Geometric match to IL_4LFB_015

Geometric discrepancy: 0.3514

The information below is about IL_4LFB_015

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

4V4W|1|AA|A|371
4V4W|1|AA|C|372
4V4W|1|AA|A|373
4V4W|1|AA|A|374
4V4W|1|AA|U|375
*
4V4W|1|AA|A|389
4V4W|1|AA|U|390

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S ribosomal subunit protein S16