IL_4V4W_022

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

4V4W|1|AA|A|665

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4W_022 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.1803

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4V4W|1|AA|U|662
4V4W|1|AA|A|663
4V4W|1|AA|G|664
4V4W|1|AA|A|665
4V4W|1|AA|G|666
*
4V4W|1|AA|U|740
4V4W|1|AA|G|741
4V4W|1|AA|G|742
4V4W|1|AA|A|743

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AF

30S ribosomal subunit protein S6

Chain AO

30S ribosomal subunit protein S15