IL_4V4W_032
3D structure
- PDB id
- 4V4W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 15 Å
Loop
- Sequence
- GGUG*CCC
- Length
- 7 nucleotides
- Bulged bases
- 4V4W|1|AA|U|1049
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4W_032 not in the Motif Atlas
- Geometric match to IL_1Y27_001
- Geometric discrepancy: 0.2638
- The information below is about IL_1Y27_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
4V4W|1|AA|G|1047
4V4W|1|AA|G|1048
4V4W|1|AA|U|1049
4V4W|1|AA|G|1050
*
4V4W|1|AA|C|1208
4V4W|1|AA|C|1209
4V4W|1|AA|C|1210
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
No other chains within 10ÅColoring options: