IL_4V4W_034

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GG*UCAUC

Length

7 nucleotides

Bulged bases

4V4W|1|AA|C|1200, 4V4W|1|AA|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4W_034 not in the Motif Atlas

Homologous match to IL_5J7L_048

Geometric discrepancy: 0.115

The information below is about IL_5J7L_048

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

4V4W|1|AA|G|1057
4V4W|1|AA|G|1058
*
4V4W|1|AA|U|1199
4V4W|1|AA|C|1200
4V4W|1|AA|A|1201
4V4W|1|AA|U|1202
4V4W|1|AA|C|1203

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AC

30S ribosomal subunit protein S3

Chain AJ

30S ribosomal subunit protein S10