IL_4V4W_038

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CCAGC*GG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4W_038 not in the Motif Atlas

Homologous match to IL_4LFB_049

Geometric discrepancy: 0.2139

The information below is about IL_4LFB_049

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_15052.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

4V4W|1|AA|C|1128
4V4W|1|AA|C|1129
4V4W|1|AA|A|1130
4V4W|1|AA|G|1131
4V4W|1|AA|C|1132
*
4V4W|1|AA|G|1142
4V4W|1|AA|G|1143

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AI

30S ribosomal subunit protein S9