IL_4V4W_039

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GAAG*CGGACC

Length

10 nucleotides

Bulged bases

4V4W|1|AA|A|1280, 4V4W|1|AA|C|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4W_039 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.2365

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

4V4W|1|AA|G|1255
4V4W|1|AA|A|1256
4V4W|1|AA|A|1257
4V4W|1|AA|G|1258
*
4V4W|1|AA|C|1277
4V4W|1|AA|G|1278
4V4W|1|AA|G|1279
4V4W|1|AA|A|1280
4V4W|1|AA|C|1281
4V4W|1|AA|C|1282

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AC

30S ribosomal subunit protein S3

Chain AJ

30S ribosomal subunit protein S10

Chain AN

30S ribosomal subunit protein S14