IL_4V4W_070

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GAAAG*CUC

Length

8 nucleotides

Bulged bases

4V4W|1|B0|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4W_070 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.2826

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_51387.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

20

Unit IDs

4V4W|1|B0|G|1087
4V4W|1|B0|A|1088
4V4W|1|B0|A|1089
4V4W|1|B0|A|1090
4V4W|1|B0|G|1091
*
4V4W|1|B0|C|1100
4V4W|1|B0|U|1101
4V4W|1|B0|C|1102

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L7/L12

Chain BG

50S ribosomal protein L11