IL_4V4W_075

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CCUAAG*CGAUGG

Length

12 nucleotides

Bulged bases

4V4W|1|B0|U|1379

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4W_075 not in the Motif Atlas

Geometric match to IL_4WF9_104

Geometric discrepancy: 0.2648

The information below is about IL_4WF9_104

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4V4W|1|B0|C|1350
4V4W|1|B0|C|1351
4V4W|1|B0|U|1352
4V4W|1|B0|A|1353
4V4W|1|B0|A|1354
4V4W|1|B0|G|1355
*
4V4W|1|B0|C|1376
4V4W|1|B0|G|1377
4V4W|1|B0|A|1378
4V4W|1|B0|U|1379
4V4W|1|B0|G|1380
4V4W|1|B0|G|1381

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BA

50S ribosomal protein L2