IL_4V4W_080

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GCUAU*AAAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4W_080 not in the Motif Atlas

Geometric match to IL_4V9F_055

Geometric discrepancy: 0.3529

The information below is about IL_4V9F_055

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

4V4W|1|B0|G|1436
4V4W|1|B0|C|1437
4V4W|1|B0|U|1438
4V4W|1|B0|A|1439
4V4W|1|B0|U|1440
*
4V4W|1|B0|A|1551
4V4W|1|B0|A|1552
4V4W|1|B0|A|1553
4V4W|1|B0|G|1555
4V4W|1|B0|C|1556

Current chains

Chain B0

23S ribosomal RNA

Nearby chains