IL_4V4W_087

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

4V4W|1|B0|G|1699

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4W_087 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.0903

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

4V4W|1|B0|C|1686
4V4W|1|B0|G|1687
4V4W|1|B0|U|1688
4V4W|1|B0|A|1689
4V4W|1|B0|A|1690
4V4W|1|B0|C|1691
*
4V4W|1|B0|G|1696
4V4W|1|B0|G|1697
4V4W|1|B0|A|1698
4V4W|1|B0|G|1699
4V4W|1|B0|A|1700
4V4W|1|B0|A|1701
4V4W|1|B0|G|1702

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA