IL_4V4W_091

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

4V4W|1|B0|C|2055, 4V4W|1|B0|U|2613, 4V4W|1|B0|A|2614

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4W_091 not in the Motif Atlas

Homologous match to IL_4WF9_079

Geometric discrepancy: 0.1918

The information below is about IL_4WF9_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80025.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

8

Unit IDs

4V4W|1|B0|A|2054
4V4W|1|B0|C|2055
4V4W|1|B0|G|2056
*
4V4W|1|B0|C|2612
4V4W|1|B0|U|2613
4V4W|1|B0|A|2614
4V4W|1|B0|U|2615

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BQ

50S ribosomal protein L22