IL_4V4W_095
3D structure
- PDB id
- 4V4W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 15 Å
Loop
- Sequence
- AAU*AGGUU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4W_095 not in the Motif Atlas
- Geometric match to IL_4V9F_080
- Geometric discrepancy: 0.1614
- The information below is about IL_4V9F_080
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_61476.2
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 7
Unit IDs
4V4W|1|B0|A|2297
4V4W|1|B0|A|2298
4V4W|1|B0|U|2299
*
4V4W|1|B0|A|2317
4V4W|1|B0|G|2318
4V4W|1|B0|G|2319
4V4W|1|B0|U|2320
4V4W|1|B0|U|2321
Current chains
- Chain B0
- 23S ribosomal RNA
Nearby chains
- Chain AV
- Transfer RNA; tRNA
- Chain B9
- 5S ribosomal RNA; 5S rRNA
- Chain BD
- 50S ribosomal protein L5
- Chain BM
- 50S ribosomal protein L18
- Chain BU
- 50S ribosomal protein L27
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