IL_4V4W_103

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

UCACU*AAA

Length

8 nucleotides

Bulged bases

4V4W|1|B0|A|2726

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4W_103 not in the Motif Atlas

Homologous match to IL_4WF9_101

Geometric discrepancy: 0.297

The information below is about IL_4WF9_101

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

4V4W|1|B0|U|2680
4V4W|1|B0|C|2681
4V4W|1|B0|A|2682
4V4W|1|B0|C|2683
4V4W|1|B0|U|2684
*
4V4W|1|B0|A|2725
4V4W|1|B0|A|2726
4V4W|1|B0|A|2727

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BB

50S ribosomal protein L3

Chain BI

50S ribosomal protein L14

Chain BN

50S ribosomal protein L19