IL_4V4W_106

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

4V4W|1|B0|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4W_106 not in the Motif Atlas

Homologous match to IL_4WF9_104

Geometric discrepancy: 0.1613

The information below is about IL_4WF9_104

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V4W|1|B0|G|2737
4V4W|1|B0|A|2738
4V4W|1|B0|U|2739
4V4W|1|B0|A|2740
4V4W|1|B0|A|2741
4V4W|1|B0|G|2742
*
4V4W|1|B0|C|2762
4V4W|1|B0|G|2763
4V4W|1|B0|A|2764
4V4W|1|B0|A|2765
4V4W|1|B0|A|2766
4V4W|1|B0|C|2767

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BB

50S ribosomal protein L3

Chain BE

50S ribosomal protein L6

Chain BH

50S ribosomal protein L13