IL_4V4W_119

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CGGCUAACU*AGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4W_119 not in the Motif Atlas

Geometric match to IL_4V83_235

Geometric discrepancy: 0.2682

The information below is about IL_4V83_235

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

4V4W|1|AA|C|504
4V4W|1|AA|G|505
4V4W|1|AA|G|506
4V4W|1|AA|C|507
4V4W|1|AA|U|508
4V4W|1|AA|A|509
4V4W|1|AA|A|510
4V4W|1|AA|C|511
4V4W|1|AA|U|512
*
4V4W|1|AA|A|539
4V4W|1|AA|G|540
4V4W|1|AA|G|541

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal subunit protein S4

Chain AL

30S ribosomal subunit protein S12