IL_4V4W_138

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GAUGUGG*CUGCGC

Length

13 nucleotides

Bulged bases

4V4W|1|B0|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4W_138 not in the Motif Atlas

Geometric match to IL_6CZR_369

Geometric discrepancy: 0.3369

The information below is about IL_6CZR_369

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71294.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4V4W|1|B0|G|1031
4V4W|1|B0|A|1032
4V4W|1|B0|U|1033
4V4W|1|B0|G|1034
4V4W|1|B0|U|1035
4V4W|1|B0|G|1036
4V4W|1|B0|G|1037
*
4V4W|1|B0|C|1118
4V4W|1|B0|U|1119
4V4W|1|B0|G|1120
4V4W|1|B0|C|1121
4V4W|1|B0|G|1122
4V4W|1|B0|C|1123

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L6

Chain BK

50S ribosomal protein L16

Chain BT

50S ribosomal protein L25