IL_4V4W_146

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GAAGG*CCCUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4W_146 not in the Motif Atlas

Geometric match to IL_7VYX_004

Geometric discrepancy: 0.3774

The information below is about IL_7VYX_004

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

4V4W|1|B0|G|1432
4V4W|1|B0|A|1433
4V4W|1|B0|A|1434
4V4W|1|B0|G|1435
4V4W|1|B0|G|1436
*
4V4W|1|B0|C|1556
4V4W|1|B0|C|1557
4V4W|1|B0|C|1558
4V4W|1|B0|U|1559
4V4W|1|B0|C|1561

Current chains

Chain B0

23S ribosomal RNA

Nearby chains