IL_4V4W_161

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

4V4W|1|B0|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4W_161 not in the Motif Atlas

Homologous match to IL_7A0S_036

Geometric discrepancy: 0.338

The information below is about IL_7A0S_036

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

4V4W|1|B0|U|1018
4V4W|1|B0|U|1019
4V4W|1|B0|A|1020
4V4W|1|B0|A|1021
4V4W|1|B0|G|1022
4V4W|1|B0|U|1023
4V4W|1|B0|G|1024
*
4V4W|1|B0|C|1140
4V4W|1|B0|U|1141
4V4W|1|B0|A|1142
4V4W|1|B0|A|1143
4V4W|1|B0|A|1144

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BH

50S ribosomal protein L13