3D structure

PDB id
4V4X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.
Experimental method
X-RAY DIFFRACTION
Resolution
5 Å

Loop

Sequence
UACAAAG*CAAAAAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V4X_045 not in the Motif Atlas
Homologous match to IL_6CZR_160
Geometric discrepancy: 0.296
The information below is about IL_6CZR_160
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_09129.1
Basepair signature
cWW-tWH-tWH-L-R-L-R-tWW-cWW
Number of instances in this motif group
3

Unit IDs

4V4X|1|AA|U|1247
4V4X|1|AA|A|1248
4V4X|1|AA|C|1249
4V4X|1|AA|A|1250
4V4X|1|AA|A|1251
4V4X|1|AA|A|1252
4V4X|1|AA|G|1253
*
4V4X|1|AA|C|1284
4V4X|1|AA|A|1285
4V4X|1|AA|A|1286
4V4X|1|AA|A|1287
4V4X|1|AA|A|1288
4V4X|1|AA|A|1289
4V4X|1|AA|G|1290

Current chains

Chain AA
16S rRNA

Nearby chains

Chain AJ
30S ribosomal protein S7
Chain AL
30S ribosomal protein S9
Chain AM
30S ribosomal protein S10
Chain AQ
30S ribosomal protein S14
Chain AX
30S ribosomal protein Thx

Coloring options:


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