#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 7break 8 9 10 11 12 13 141-142-133-126-97-8
1 IL_6CZR_1606CZR0.139701a SSU rRNAU1229A1230C1231A1232A1233A1234G1235*C1266A1267A1268A1269A1270A1271G1272cWWntWHtWHntWWcWW
2 IL_4LFB_0514LFB0.00000A SSU rRNAU1247A1248C1249A1250A1251A1252G1253*C1284A1285A1286A1287A1288A1289G1290cWWntWHtWHtWWcWW
3 IL_5J7L_0545J7L0.27300AA SSU rRNAU1247A1248C1249A1250A1251A1252G1253*C1284A1285U1286A1287A1288A1289G1290cWWntWHtWHtWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UACAAAG*CAAAAAG2
UACAAAG*CAUAAAG1
Non-Watson-Crick part of the motif
SequenceCounts
ACAAA*AAAAA2
ACAAA*AUAAA1

Release history

Release3.183.193.203.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.763.773.783.793.803.813.823.833.843.853.863.873.883.893.903.913.923.933.943.95
Date2019-05-032019-05-312019-06-282019-07-262019-08-232019-09-192019-10-162019-11-132019-12-112020-01-082020-02-052020-03-042020-04-012020-04-292020-05-272020-06-242020-07-222020-08-192020-09-162020-10-142020-11-112020-12-092021-01-062021-02-032021-03-032021-03-312021-04-282021-05-262021-06-232021-07-212021-08-182021-09-152021-10-132021-11-102021-12-082022-01-052022-02-022022-03-022022-03-302022-04-272022-05-252022-06-222022-07-202022-08-172022-10-122022-11-092022-12-072023-01-042023-02-012023-03-012023-03-292023-04-262023-05-242023-06-212023-07-192023-08-162023-09-132023-10-112023-11-082023-12-062024-01-032024-01-032024-01-312024-02-282024-03-272024-04-242024-05-222024-06-192024-07-172024-08-142024-09-112024-10-092024-11-062024-12-042025-01-012025-01-292025-02-262025-03-26
StatusNew id, 2 parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (3)
  • Basepair signature
    cWW-tWH-tWH-L-R-L-R-tWW-cWW
    Heat map statistics
    Min 0.14 | Avg 0.16 | Max 0.30
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.1052 s