IL_4V4X_080

3D structure

PDB id

4V4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

4V4X|1|BA|A|1156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4X_080 not in the Motif Atlas

Homologous match to IL_7A0S_033

Geometric discrepancy: 0.2067

The information below is about IL_7A0S_033

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

4V4X|1|BA|C|998
4V4X|1|BA|U|999
4V4X|1|BA|A|1000
4V4X|1|BA|A|1001
4V4X|1|BA|G|1002
*
4V4X|1|BA|C|1153
4V4X|1|BA|G|1154
4V4X|1|BA|A|1155
4V4X|1|BA|A|1156
4V4X|1|BA|G|1157

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L30

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BT

50S ribosomal protein L20

Chain BU

50S ribosomal protein L21