IL_4V4Y_058

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

UGGAUG*CUGAAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Y_058 not in the Motif Atlas

Geometric match to IL_8B0X_056

Geometric discrepancy: 0.3954

The information below is about IL_8B0X_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4V4Y|1|BA|U|25
4V4Y|1|BA|G|26
4V4Y|1|BA|G|27
4V4Y|1|BA|A|28
4V4Y|1|BA|U|29
4V4Y|1|BA|G|30
*
4V4Y|1|BA|C|510
4V4Y|1|BA|U|511
4V4Y|1|BA|G|512
4V4Y|1|BA|A|513
4V4Y|1|BA|A|514
4V4Y|1|BA|A|515

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L32

Chain BT

50S ribosomal protein L20

Chain BV

50S ribosomal protein L22