IL_4V4Z_011
3D structure
- PDB id
- 4V4Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 4.51 Å
Loop
- Sequence
- CAUCAG*CGACGACG
- Length
- 14 nucleotides
- Bulged bases
- 4V4Z|1|AA|U|244, 4V4Z|1|AA|C|280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4Z_011 not in the Motif Atlas
- Homologous match to IL_4LFB_011
- Geometric discrepancy: 0.2172
- The information below is about IL_4LFB_011
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.4
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V4Z|1|AA|C|242
4V4Z|1|AA|A|243
4V4Z|1|AA|U|244
4V4Z|1|AA|C|245
4V4Z|1|AA|A|246
4V4Z|1|AA|G|247
*
4V4Z|1|AA|C|277
4V4Z|1|AA|G|278
4V4Z|1|AA|A|279
4V4Z|1|AA|C|280
4V4Z|1|AA|G|281
4V4Z|1|AA|A|282
4V4Z|1|AA|C|283
4V4Z|1|AA|G|284
Current chains
- Chain AA
- 16S rRNA
Nearby chains
- Chain AO
- 30S ribosomal protein S12
- Chain AT
- 30S ribosomal protein S17
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