IL_4V50_096

3D structure

PDB id

4V50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

4V50|1|BB|U|846, 4V50|1|BB|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V50_096 not in the Motif Atlas

Geometric match to IL_8B0X_179

Geometric discrepancy: 0.3756

The information below is about IL_8B0X_179

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01742.1

Basepair signature

cWW-L-cWW-R-cWW

Number of instances in this motif group

3

Unit IDs

4V50|1|BB|A|844
4V50|1|BB|A|845
4V50|1|BB|U|846
4V50|1|BB|U|847
4V50|1|BB|C|848
*
4V50|1|BB|G|930
4V50|1|BB|U|931
4V50|1|BB|U|932
4V50|1|BB|A|933
4V50|1|BB|U|934

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain BZ

50S ribosomal protein L30