IL_4V51_034

3D structure

PDB id

4V51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V51_034 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.072

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4V51|1|AA|G|887
4V51|1|AA|G|888
4V51|1|AA|A|889
4V51|1|AA|G|890
4V51|1|AA|U|891
4V51|1|AA|A|892
4V51|1|AA|C|893
4V51|1|AA|G|894
*
4V51|1|AA|U|905
4V51|1|AA|G|906
4V51|1|AA|A|907
4V51|1|AA|A|908
4V51|1|AA|A|909
4V51|1|AA|C|910

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AL

30S RIBOSOMAL PROTEIN S12

Chain AQ

30S RIBOSOMAL PROTEIN S17