IL_4V51_105
3D structure
- PDB id
- 4V51 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GCAAUG*CAGC
- Length
- 10 nucleotides
- Bulged bases
- 4V51|1|BA|G|1332
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V51_105 not in the Motif Atlas
- Geometric match to IL_4V88_408
- Geometric discrepancy: 0.3756
- The information below is about IL_4V88_408
- Detailed Annotation
- C-loop with extra cWW pair
- Broad Annotation
- C-loop
- Motif group
- IL_11347.2
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
4V51|1|BA|G|1319
4V51|1|BA|C|1320
4V51|1|BA|A|1321
4V51|1|BA|A|1322
4V51|1|BA|U|1323
4V51|1|BA|G|1324
*
4V51|1|BA|C|1330
4V51|1|BA|A|1331
4V51|1|BA|G|1332
4V51|1|BA|C|1333
Current chains
- Chain BA
- 23S RIBOSOMAL RNA
Nearby chains
- Chain BW
- 50S RIBOSOMAL PROTEIN L22
- Chain BX
- 50S RIBOSOMAL PROTEIN L23
Coloring options: