IL_4V51_384

3D structure

PDB id

4V51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAU*AUAG

Length

9 nucleotides

Bulged bases

4V51|1|DA|A|283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V51_384 not in the Motif Atlas

Homologous match to IL_9DFE_009

Geometric discrepancy: 0.2115

The information below is about IL_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4V51|1|DA|C|280
4V51|1|DA|G|281
4V51|1|DA|A|282
4V51|1|DA|A|283
4V51|1|DA|U|284
*
4V51|1|DA|A|357
4V51|1|DA|U|358
4V51|1|DA|A|359
4V51|1|DA|G|360

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains