IL_4V52_033
3D structure
- PDB id
- 4V52 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.21 Å
Loop
- Sequence
- UGAAAUCC*GAACUG
- Length
- 14 nucleotides
- Bulged bases
- 4V52|1|AA|U|632
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V52_033 not in the Motif Atlas
- Homologous match to IL_5J7L_030
- Geometric discrepancy: 0.0958
- The information below is about IL_5J7L_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_78349.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
4V52|1|AA|U|605
4V52|1|AA|G|606
4V52|1|AA|A|607
4V52|1|AA|A|608
4V52|1|AA|A|609
4V52|1|AA|U|610
4V52|1|AA|C|611
4V52|1|AA|C|612
*
4V52|1|AA|G|628
4V52|1|AA|A|629
4V52|1|AA|A|630
4V52|1|AA|C|631
4V52|1|AA|U|632
4V52|1|AA|G|633
Current chains
- Chain AA
- 16S rRNA
Nearby chains
- Chain AD
- 30S ribosomal protein S4
- Chain AH
- 30S ribosomal protein S8
- Chain AP
- 30S ribosomal protein S16
- Chain AQ
- 30S ribosomal protein S17
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