IL_4V53_028

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

4V53|1|AA|A|532, 4V53|1|AA|U|534, 4V53|1|AA|A|535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V53_028 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1706

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V53|1|AA|G|515
4V53|1|AA|U|516
4V53|1|AA|G|517
4V53|1|AA|C|518
4V53|1|AA|C|519
4V53|1|AA|A|520
4V53|1|AA|G|521
*
4V53|1|AA|C|528
4V53|1|AA|G|529
4V53|1|AA|G|530
4V53|1|AA|U|531
4V53|1|AA|A|532
4V53|1|AA|A|533
4V53|1|AA|U|534
4V53|1|AA|A|535
4V53|1|AA|C|536

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AL

30S ribosomal protein S12