IL_4V53_150

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

AA*UACU

Length

6 nucleotides

Bulged bases (A, C, G, U)

2439A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V53_150 not in the Motif Atlas

Homologous match to IL_7A0S_076

Geometric discrepancy: 0.1069

The information below is about IL_7A0S_076

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_42622.5

Basepair signature

cWW-cSH-tHS-cWW

Number of instances in this motif group

33

Unit IDs

4V53|1|BB|A|2070
4V53|1|BB|A|2071
*
4V53|1|BB|U|2438
4V53|1|BB|A|2439
4V53|1|BB|C|2440
4V53|1|BB|U|2441

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2