IL_4V53_172

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases (A, C, G, U)

2689U, 2690U

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V53_172 not in the Motif Atlas

Homologous match to IL_5J7L_348

Geometric discrepancy: 0.0821

The information below is about IL_5J7L_348

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08296.4

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

4V53|1|BB|U|2687
4V53|1|BB|G|2688
4V53|1|BB|U|2689
4V53|1|BB|U|2690
4V53|1|BB|C|2691
*
4V53|1|BB|G|2718
4V53|1|BB|G|2719
4V53|1|BB|U|2720
4V53|1|BB|A|2721
4V53|1|BB|G|2722

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BN

50S ribosomal protein L17

Chain BP

50S ribosomal protein L19