IL_4V53_237

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V53_237 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1313

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4V53|1|CA|C|1303
4V53|1|CA|G|1304
4V53|1|CA|G|1305
4V53|1|CA|A|1306
4V53|1|CA|U|1307
4V53|1|CA|U|1308
*
4V53|1|CA|A|1329
4V53|1|CA|U|1330
4V53|1|CA|G|1331
4V53|1|CA|A|1332
4V53|1|CA|A|1333
4V53|1|CA|G|1334

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CM

30S ribosomal protein S13