IL_4V53_290

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

4V53|1|DB|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V53_290 not in the Motif Atlas

Homologous match to IL_6PRV_001

Geometric discrepancy: 0.1384

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

4V53|1|DB|G|1059
4V53|1|DB|U|1060
4V53|1|DB|U|1061
4V53|1|DB|G|1062
*
4V53|1|DB|C|1076
4V53|1|DB|A|1077
4V53|1|DB|U|1078
4V53|1|DB|C|1079

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DI

50S ribosomal protein L11