IL_4V55_216

3D structure

PDB id

4V55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

4V55|1|CA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V55_216 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.1142

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

4V55|1|CA|U|684
4V55|1|CA|G|685
4V55|1|CA|U|686
4V55|1|CA|A|687
4V55|1|CA|G|688
*
4V55|1|CA|C|699
4V55|1|CA|G|700
4V55|1|CA|U|701
4V55|1|CA|A|702
4V55|1|CA|G|703
4V55|1|CA|A|704
4V55|1|CA|G|705
4V55|1|CA|A|706

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CK

30S ribosomal protein S11

Chain DB

Large subunit ribosomal RNA; LSU rRNA