IL_4V55_346

3D structure

PDB id

4V55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

4V55|1|DB|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V55_346 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0839

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

4V55|1|DB|C|2636
4V55|1|DB|U|2637
4V55|1|DB|G|2638
4V55|1|DB|A|2639
4V55|1|DB|G|2640
*
4V55|1|DB|C|2774
4V55|1|DB|G|2775
4V55|1|DB|A|2776
4V55|1|DB|G|2777
4V55|1|DB|A|2778
4V55|1|DB|U|2779
4V55|1|DB|G|2780
4V55|1|DB|A|2781
4V55|1|DB|G|2782

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DD

50S ribosomal protein L3

Chain DJ

50S ribosomal protein L13