IL_4V56_210
3D structure
- PDB id
- 4V56 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.93 Å
Loop
- Sequence
- UGAAAUCC*GAACUG
- Length
- 14 nucleotides
- Bulged bases
- 4V56|1|CA|U|632
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V56_210 not in the Motif Atlas
- Homologous match to IL_5J7L_030
- Geometric discrepancy: 0.1331
- The information below is about IL_5J7L_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_78349.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
4V56|1|CA|U|605
4V56|1|CA|G|606
4V56|1|CA|A|607
4V56|1|CA|A|608
4V56|1|CA|A|609
4V56|1|CA|U|610
4V56|1|CA|C|611
4V56|1|CA|C|612
*
4V56|1|CA|G|628
4V56|1|CA|A|629
4V56|1|CA|A|630
4V56|1|CA|C|631
4V56|1|CA|U|632
4V56|1|CA|G|633
Current chains
- Chain CA
- 16S rRNA
Nearby chains
- Chain CD
- 30S ribosomal protein S4
- Chain CH
- 30S ribosomal protein S8
- Chain CP
- 30S ribosomal protein S16
- Chain CQ
- 30S ribosomal protein S17
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