IL_4V56_215

3D structure

PDB id

4V56 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

4V56|1|CA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V56_215 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.1267

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

4V56|1|CA|U|684
4V56|1|CA|G|685
4V56|1|CA|U|686
4V56|1|CA|A|687
4V56|1|CA|G|688
*
4V56|1|CA|C|699
4V56|1|CA|G|700
4V56|1|CA|U|701
4V56|1|CA|A|702
4V56|1|CA|G|703
4V56|1|CA|A|704
4V56|1|CA|G|705
4V56|1|CA|A|706

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CK

30S ribosomal protein S11

Chain DB

Large subunit ribosomal RNA; LSU rRNA