IL_4V57_038

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases (A, C, G, U)

702A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V57_038 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.1054

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.3

Basepair signature

cWW-tSS-L-tSH-L-R-R-cWW-L

Number of instances in this motif group

18

Unit IDs

4V57|1|AA|U|684
4V57|1|AA|G|685
4V57|1|AA|U|686
4V57|1|AA|A|687
4V57|1|AA|G|688
*
4V57|1|AA|C|699
4V57|1|AA|G|700
4V57|1|AA|U|701
4V57|1|AA|A|702
4V57|1|AA|G|703
4V57|1|AA|A|704
4V57|1|AA|G|705
4V57|1|AA|A|706

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AK

30S ribosomal protein S11

Chain BB

Large subunit ribosomal RNA; LSU rRNA