IL_4V57_104

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases (A, C, G, U)

1156A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V57_104 not in the Motif Atlas

Homologous match to IL_4WF9_036

Geometric discrepancy: 0.098

The information below is about IL_4WF9_036

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.3

Basepair signature

cWW-tWH-R-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

4V57|1|BB|C|998
4V57|1|BB|U|999
4V57|1|BB|A|1000
4V57|1|BB|A|1001
4V57|1|BB|G|1002
*
4V57|1|BB|C|1153
4V57|1|BB|G|1154
4V57|1|BB|A|1155
4V57|1|BB|A|1156
4V57|1|BB|G|1157

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BA

5S ribosomal RNA; 5S rRNA

Chain BQ

50S ribosomal protein L20

Chain BY

50S ribosomal protein L30