IL_4V57_168

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

4V57|1|BB|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V57_168 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0887

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

4V57|1|BB|C|2636
4V57|1|BB|U|2637
4V57|1|BB|G|2638
4V57|1|BB|A|2639
4V57|1|BB|G|2640
*
4V57|1|BB|C|2774
4V57|1|BB|G|2775
4V57|1|BB|A|2776
4V57|1|BB|G|2777
4V57|1|BB|A|2778
4V57|1|BB|U|2779
4V57|1|BB|G|2780
4V57|1|BB|A|2781
4V57|1|BB|G|2782

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BJ

50S ribosomal protein L13