IL_4V57_205

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

4V57|1|CA|A|532, 4V57|1|CA|U|534, 4V57|1|CA|A|535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V57_205 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1586

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V57|1|CA|G|515
4V57|1|CA|U|516
4V57|1|CA|G|517
4V57|1|CA|C|518
4V57|1|CA|C|519
4V57|1|CA|A|520
4V57|1|CA|G|521
*
4V57|1|CA|C|528
4V57|1|CA|G|529
4V57|1|CA|G|530
4V57|1|CA|U|531
4V57|1|CA|A|532
4V57|1|CA|A|533
4V57|1|CA|U|534
4V57|1|CA|A|535
4V57|1|CA|C|536

Current chains

Chain CA

16S rRNA

Nearby chains

Chain BB

Large subunit ribosomal RNA; LSU rRNA

Chain CC

30S ribosomal protein S3

Chain CL

30S ribosomal protein S12