IL_4V57_286

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

4V57|1|DB|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V57_286 not in the Motif Atlas

Homologous match to IL_5J7L_282

Geometric discrepancy: 0.0875

The information below is about IL_5J7L_282

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW

Motif group

IL_12554.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

14

Unit IDs

4V57|1|DB|G|1031
4V57|1|DB|A|1032
4V57|1|DB|U|1033
4V57|1|DB|G|1034
*
4V57|1|DB|C|1121
4V57|1|DB|G|1122
4V57|1|DB|C|1123

Current chains

Chain DB

23S rRNA

Nearby chains

Chain D4

50S ribosomal protein L36

Chain DM

50S ribosomal protein L16