IL_4V57_293

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

4V57|1|DB|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V57_293 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.1437

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.4

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

31

Unit IDs

4V57|1|DB|C|1208
4V57|1|DB|U|1209
4V57|1|DB|G|1210
4V57|1|DB|C|1211
4V57|1|DB|G|1212
4V57|1|DB|A|1213
4V57|1|DB|A|1214
4V57|1|DB|G|1215
*
4V57|1|DB|U|1234
4V57|1|DB|G|1235
4V57|1|DB|G|1236
4V57|1|DB|A|1237
4V57|1|DB|G|1238

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DQ

50S ribosomal protein L20