IL_4V57_327

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AA*UACU

Length

6 nucleotides

Bulged bases

4V57|1|DB|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V57_327 not in the Motif Atlas

Homologous match to IL_7A0S_076

Geometric discrepancy: 0.1196

The information below is about IL_7A0S_076

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

4V57|1|DB|A|2070
4V57|1|DB|A|2071
*
4V57|1|DB|U|2438
4V57|1|DB|A|2439
4V57|1|DB|C|2440
4V57|1|DB|U|2441

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DC

50S ribosomal protein L2