IL_4V5A_067

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUGAGUAG*CGAAAGG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5A_067 not in the Motif Atlas

Homologous match to IL_7A0S_007

Geometric discrepancy: 0.1535

The information below is about IL_7A0S_007

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.2

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

4V5A|1|BA|C|238
4V5A|1|BA|U|239
4V5A|1|BA|G|240
4V5A|1|BA|A|241
4V5A|1|BA|G|242
4V5A|1|BA|U|243
4V5A|1|BA|A|244
4V5A|1|BA|G|245
*
4V5A|1|BA|C|253
4V5A|1|BA|G|254
4V5A|1|BA|A|255
4V5A|1|BA|A|256
4V5A|1|BA|A|257
4V5A|1|BA|G|258
4V5A|1|BA|G|259

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B8

50S RIBOSOMAL PROTEIN L35

Chain BP

50S RIBOSOMAL PROTEIN L15