IL_4V5A_092

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

4V5A|1|BA|A|1156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5A_092 not in the Motif Atlas

Homologous match to IL_4WF9_036

Geometric discrepancy: 0.1621

The information below is about IL_4WF9_036

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

22

Unit IDs

4V5A|1|BA|C|998
4V5A|1|BA|U|999
4V5A|1|BA|A|1000
4V5A|1|BA|A|1001
4V5A|1|BA|G|1002
*
4V5A|1|BA|C|1153
4V5A|1|BA|G|1154
4V5A|1|BA|A|1155
4V5A|1|BA|A|1156
4V5A|1|BA|G|1157

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B3

50S RIBOSOMAL PROTEIN L30

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BU

50S RIBOSOMAL PROTEIN L20