IL_4V5A_108

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UAG*CAGG

Length

7 nucleotides

Bulged bases

4V5A|1|BA|G|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5A_108 not in the Motif Atlas

Homologous match to IL_7A0S_052

Geometric discrepancy: 0.2263

The information below is about IL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38565.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

12

Unit IDs

4V5A|1|BA|U|1433
4V5A|1|BA|A|1434
4V5A|1|BA|G|1435
*
4V5A|1|BA|C|1557
4V5A|1|BA|A|1558
4V5A|1|BA|G|1559
4V5A|1|BA|G|1560

Current chains

Chain BA

23S ribosomal RNA

Nearby chains